Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015922431.1_cds_XP_016471200.1_63573
CDS Infomation

[gene=LOC107793375] [db_xref=GeneID:107793375] [protein=aspartic proteinase nepenthesin-1-like] [protein_id=XP_016471200.1] [location=complement(47161..48681)] [gbkey=CDS]
Sequence

ATGGCTATAAATACCAGCTTCCCCTTTGCCTTATTTCATGGGAAGAAATCATTTTTAAGG
AAAATGAAAACACCTTTCCGCCTCATAACTTTCTTCTTGATCTTCTTTTTTCTTTCTAGT
GCATTGCTTCATTTCAACCAATGCTATGCTAAGGAAAGAACCCCTTCTTCTTCGTTGGTG
TTAAGTTTAACTCGTTCGAAAAATAGCCTTTCGATTCCCAAGTCTTCGTATAACTCGGTG
AAAAAAACCTTTGAGACATTGGACGACATAATGGAGCCATTGAGAGAAGTGAGGGATGGT
TATTTGATAACTTTGAATTTGGGAACACCCCCACAAATTATCCAAGTGTATATGGATACA
GGGAATGACCTTACTTGGGTACCTTGTGGAAACCTATCCTTCGATTGTATAGATTGTGAT
GATTATAAGAATCACAAGTTAATGTCAAGCTTCTCTCCTTCATTTTCATCTTCTTCCTCT
AGGGATTTTTGTGATAGCCACTCTTGTATTAATATCCATAGCTCCGATAACGCGTTCGAT
CAATGCACAGTTGCAGGATGCTCTTTAAGTAGCCTACTTAAGGGCACTTGCTCAAGACCA
TGTCCTTCTTTTGCTTACACCTATGGTGAAGGTGTTGTAACTGGAACCCTAACTAGGGAT
ACCCTAAGAGTACATTCAAACCCTAATTCTAATATTAGGGAAGTCCAAAAGTTTGTCTTT
GGATGTGTTGGAACAACTTATAGAGAGCCTATTGGGATTGTAGGGTTTGGGAAAGGTCCA
CTTTCTTTACCTTCTCAATTAGGGTTTCTTCAAAAGGGTTTTTCACATTGCTTCTTGCCT
TTCAAGTTTGCAAATAACCCTAATATGTCAAGCCCTCTAGTTGTAGGTCAACAAGCTATT
TCTTCTAAAGAAAATTTCCAATTTACTCCTATGTTGAAAAGCTCTATGTACCCTAACTTC
TATTACATTGGCCTAGAGGCCATAACTGTGGGGAATGGTGGTGCCACTGCACAAGTACCC
TTAGCCTTGAGAGAAGTTGATTCTTTAGGCAATGGGGGAATGTTGATTGATTCTGGAACC
ACTTATACTCACTTACCTGAGCCATTCTACTCGAATCTTCTCACCGCTCTTGAATCATCG
ATAAATTACCCACGAGCAGAGGAAGTCGAGGCACGAACAGGATTTGATCTTTGTTACAAG
CTCCCATGCCCTAGTAACAACATTAATACTCTAGCTACCGATGATTTCCCTTTAATTACA
TTCCATTTCTTGAACAATGTGAGTCTTGTTTTGCCCAATGGGAATAATTTCTATGCAATG
GGTGCACCAAGAAATTCAACAGTGGTGAAATGCTTGTTGTTCCAAAGCATGGAAGATTCT
GAAGAGGGGCCAGCTGGGATTTTTGGAAGCTTCCAACAGCAAAATGTGGAAGTTGTGTAT
GACTTGGAGAAGGAAAGGATTGGATTTCAAAACACTGATTGTGCCGCAGCTGCAGCTTCT
CATGGACTTCACAAGAAATAA

Peptide Sequence

PEP ID

XP_016471200.1
PEP Infomation

PREDICTED: aspartic proteinase nepenthesin-1-like [Nicotiana tabacum]
Sequence

MAINTSFPFALFHGKKSFLRKMKTPFRLITFFLIFFFLSSALLHFNQCYAKERTPSSSLV
LSLTRSKNSLSIPKSSYNSVKKTFETLDDIMEPLREVRDGYLITLNLGTPPQIIQVYMDT
GNDLTWVPCGNLSFDCIDCDDYKNHKLMSSFSPSFSSSSSRDFCDSHSCINIHSSDNAFD
QCTVAGCSLSSLLKGTCSRPCPSFAYTYGEGVVTGTLTRDTLRVHSNPNSNIREVQKFVF
GCVGTTYREPIGIVGFGKGPLSLPSQLGFLQKGFSHCFLPFKFANNPNMSSPLVVGQQAI
SSKENFQFTPMLKSSMYPNFYYIGLEAITVGNGGATAQVPLALREVDSLGNGGMLIDSGT
TYTHLPEPFYSNLLTALESSINYPRAEEVEARTGFDLCYKLPCPSNNINTLATDDFPLIT
FHFLNNVSLVLPNGNNFYAMGAPRNSTVVKCLLFQSMEDSEEGPAGIFGSFQQQNVEVVY
DLEKERIGFQNTDCAAAAASHGLHKK

Transcript Sequence

Gene sequence data has not been registered.